Biota
type: Concept
in scheme: TAXREF-LD
top concept of: TAXREF-LD
is the reference name of: Biota

Biota
type: Class
has reference name: Biota

Catalog of TAXREF-LD datasets
type: Catalog
title: Catalogue des jeux de données TAXREF-LD @fr
language: fr
language: http://data.bnf.fr/ark:/12148/cb11935375d
language: en
language: http://data.bnf.fr/ark:/12148/cb119308987
dataset: TAXREF-LD
dataset: TAXREF: Taxonomic register for flora and fauna of mainland France and overseas territories
publisher: National Museum of Natural History of Paris
publisher: French National Inventory of Natural Heritage
publisher: University Côte d'Azur
publisher: Inria
publisher: CNRS

TAXREF: Taxonomic register for flora and fauna of mainland France and overseas territories
type: Dataset
title: TAXREF : Référentiel taxonomique pour la flore et la faune de France métropolitaine et outre-mer @fr
description: TAXREF est le référentiel taxonomique national pour la faune, la flore et la fonge de France métropolitaine et d’outre-mer, élaboré et diffusé par le Muséum national d’Histoire naturelle (MNHN). TAXREF est téléchargeable depuis le site Web du MNHN. TAXREF-LD, la représentation Linked Data de TAXREF, est une initiative conjointe du MNHN et du laboratoire I3S (Université Côte d'Azur, CNRS, Inria). @fr
description: TAXREF is the national taxonomical register for fauna and flora in mainland France and overseas territories, produced by the French National Museum of Natural History (MNHN). TAXREF is downloadable from the MNHN Web site and can be queriesd through a Web service. TAXREF-LD, the Linked Data representation of TAXREF, is a joint initiative of MNHN and the I3S laboratory (Université Côte d'Azur, CNRS, Inria).
landing page: https://inpn.mnhn.fr/programme/referentiel-taxonomique-taxref
license: fr
version info: 15.0
version: 15.0
issued: 2021-12-16
creator: O. Gargominy
creator: S. Tercerie
creator: C. Régnier
creator: T. Ramage
creator: C. Schoelinck
creator: P. Dupont
creator: E. Vandel
creator: P. Daszkiewicz
publisher: National Museum of Natural History of Paris
publisher: French National Inventory of Natural Heritage
subject of: TAXREF v15, référentiel taxonomique pour la France : méthodologie, mise en œuvre et diffusion
accrual periodicity: freq-A

TAXREF-LD
type: Dataset
type: Ontology
type: ConceptScheme
has top concept: Biota
acronym: taxref-ld
description: Representation of the TAXREF taxonomic register as linked data. This resource is at the same time an ontology of classes depicting the taxa and a thesaurus (SKOS concept scheme) of the scientific names attached to the taxa.
description: Représentation du référentiel taxonomique TAXREF comme un jeu de données liées. Cette ressource est à la fois une ontologies des classes représentant les taxons, et un thésaurus (SKOS concept scheme) des noms scientifiques désignant ces taxons. @fr
bibliographic citation: Franck Michel, Olivier Gargominy, Sandrine Tercerie, Catherine Faron Zucker. A Model to Represent Nomenclatural and Taxonomic Information as Linked Data. Application to the French Taxonomic Register, TAXREF. In Proceedings of the 2nd International Workshop on Semantics for Biodiversity (S4Biodiv) co-located with ISWC 2017, Oct 2017, Vienna, Austria. CEUR Vol. 1933, pp.1-12, 2017
doi: 10.5281/zenodo.6940891
license: fr
version info: 15.2
version IRI: http://taxref.mnhn.fr/lod/taxref-ld/15.2
version: 15.2
created on: 2015
created: 2015
date created: 2015
issued: 2022-07-29
date published: 2022-07-29
modified: 2022-07-29
date modified: 2022-07-29
publisher: National Museum of Natural History of Paris
publisher: French National Inventory of Natural Heritage
publisher: University Côte d'Azur
publisher: Inria
publisher: CNRS
creator: Franck MICHEL
creator: Catherine FARON
creator: Olivier GARGOMINY
creator: Sandrine TERCERIE
author: Franck MICHEL
author: Catherine FARON
author: Olivier GARGOMINY
author: Sandrine TERCERIE
contributor: Antonia ETTORRE
contributor: Julien Kaplan
funded by: National Museum of Natural History of Paris
funded by: French National Inventory of Natural Heritage
funded by: University Côte d'Azur
funded by: Inria
funded by: CNRS
access rights: c abf2
access rights: PUBLIC
rights holder: National Museum of Natural History of Paris
rights holder: French National Inventory of Natural Heritage
rights holder: University Côte d'Azur
rights holder: Inria
rights holder: CNRS
subject of: A Model to Represent Nomenclatural and Taxonomic Information as Linked Data. Application to the French Taxonomic Register, TAXREF
language: fr
language: http://data.bnf.fr/ark:/12148/cb11935375d
language: en
language: http://data.bnf.fr/ark:/12148/cb119308987
subject: biodiversity
subject: lifesciences
subject: taxonomy
subject: species
subject: fauna
subject: flora
subject: fungus
keywords: biodiversity
keywords: lifesciences
keywords: taxonomy
keywords: species
keywords: fauna
keywords: flora
keywords: fungus
keyword: biodiversity
keyword: lifesciences
keyword: taxonomy
keyword: species
keyword: fauna
keyword: flora
keyword: schemata
keyword: lod
keyword: deref-vocab
keyword: vocab-mappings
keyword: provenance-metadata
keyword: published-by-producer
keyword: license-metadata

Distribution
description: Distribution of TAXREF-LD as an archive of RDF Turtle files
access URL: https://doi.org/10.5281/zenodo.6940891
download URL: https://zenodo.org/record/6940891/files/taxrefld15.2.zip
media type: turtle
compress format: http://www.iana.org/assignments/media-types/application/zip

SPARQL endpoint serving the TAXREF-LD Knowledge Graph
type: Service
type: DataService
supported language: SPARQL10Query
supported language: SPARQL11Query
endpoint: sparql
endpoint URL: http://taxref.mnhn.fr/sparql
serves dataset: TAXREF-LD
available graphs: GraphCollection
  named graph: metadata
  named graph: biblio
  named graph: locations
  named graph: media
  named graph: statusCodes
  named graph: concepts
  named graph: http://taxref.mnhn.fr/lod/graph/classes/15.0
  named graph: http://taxref.mnhn.fr/lod/graph/interactions/15.0
  named graph: http://taxref.mnhn.fr/lod/graph/habitats/15.0
  named graph: http://taxref.mnhn.fr/lod/graph/statuses/15.0
  named graph: http://taxref.mnhn.fr/lod/graph/vernacular/15.0
  named graph: http://taxref.mnhn.fr/lod/graph/dbxref/15.0
  named graph: links-ncbi
  named graph: links-agrovoc
  named graph: links-worms

French National Inventory of Natural Heritage
type: Organization
name: Inventaire National du Patrimoine Naturel @fr

National Museum of Natural History of Paris
type: Organization

University Côte d'Azur
type: Organization

Inria
type: Organization

CNRS
type: Organization

Wimmics research team
type: Organization

Franck MICHEL
type: Person

Catherine FARON
type: Person

Antonia ETTORRE
type: Person

Johan MONTAGNAT
type: Person

Loïc DJIMENOU
type: Person

Sandrine TERCERIE
type: Person

Olivier GARGOMINY
type: Person

TAXREF web service
type: Entity
description: CSV, XML and JSON query web service
media type: text/csv
media type: application/xml
media type: application/json
access URL: https://taxref.mnhn.fr/taxref-web/

Morph-xR2RML
type: SoftwareAgent
description: Implementation of the xR2RML mapping language
creator: Franck MICHEL
author: Franck MICHEL
license: LICENSE-2.0
version info: 1.3.2
subject of: Translation of Relational and Non-Relational Databases into RDF with xR2RML

RDF generation process
type: Activity
description: Transformation of the JSON version of TAXREF, obtained from the web service, into RDF using the Morph-xR2RML mapping pocessing engine
used: TAXREF web service
was associated with: Morph-xR2RML

Translation of Relational and Non-Relational Databases into RDF with xR2RML
type: Article
type: AcademicArticle
type: ScholarlyArticle
issued: 2015
date published: 2015
bibliographic citation: Franck Michel, Loïc Djimenou, Catherine Faron Zucker, Johan Montagnat. Translation of Relational and Non-Relational Databases into RDF with xR2RML. Proceedings of the WebIST'15 Conference, 2015, Lisbon, Portugal. pp.443-454
doi: 10.5220/0005448304430454
creator: Franck MICHEL
creator: Loïc DJIMENOU
creator: Catherine FARON
creator: Johan MONTAGNAT
author: Franck MICHEL
author: Loïc DJIMENOU
author: Catherine FARON
author: Johan MONTAGNAT
about: Morph-xR2RML
references: Morph-xR2RML

A Model to Represent Nomenclatural and Taxonomic Information as Linked Data. Application to the French Taxonomic Register, TAXREF
type: Article
type: AcademicArticle
type: ScholarlyArticle
issued: 2017
date published: 2017
bibliographic citation: Franck Michel, Olivier Gargominy, Sandrine Tercerie, Catherine Faron Zucker. A Model to Represent Nomenclatural and Taxonomic Information as Linked Data. Application to the French Taxonomic Register, TAXREF. In Proceedings of the 2nd International Workshop on Semantics for Biodiversity (S4Biodiv) co-located with ISWC 2017, Oct 2017, Vienna, Austria. CEUR Vol. 1933, pp.1-12, 2017
creator: Franck MICHEL
creator: Olivier GARGOMINY
creator: Sandrine TERCERIE
creator: Catherine FARON
author: Franck MICHEL
author: Olivier GARGOMINY
author: Sandrine TERCERIE
author: Catherine FARON
about: TAXREF-LD
references: TAXREF-LD

TAXREF v15, référentiel taxonomique pour la France : méthodologie, mise en œuvre et diffusion
type: Report
type: Article
issued: 2021
date published: 2021
bibliographic citation: Gargominy O., Tercerie S., Régnier C., Ramage T., Dupont P., Daszkiewicz P. & Poncet L. (2021). TAXREF v15, référentiel taxonomique pour la France : méthodologie, mise en œuvre et diffusion. Muséum national d’Histoire naturelle, Paris
creator: Olivier GARGOMINY
creator: Sandrine TERCERIE
creator: Régnier C.
creator: Ramage T.
creator: Dupont P.
creator: Daszkiewicz P.
creator: Poncet L
author: Olivier GARGOMINY
author: Sandrine TERCERIE
author: Régnier C.
author: Ramage T.
author: Dupont P.
author: Daszkiewicz P.
author: Poncet L

AGROVOC Multilingual agricultural thesaurus
type: Dataset
issued: 2021-03-02

NCBI Organismal Classification
type: Dataset
issued: 2021-02-15

World Register of Marine Species
type: Dataset

Taxref2Agrovoc
type: Linkset
link predicate: exactMatch
subjects target: TAXREF-LD
objects target: AGROVOC Multilingual agricultural thesaurus
triples: 2875

Taxref2NcbiTaxon
type: Linkset
link predicate: equivalentClass
subjects target: TAXREF-LD
objects target: NCBI Organismal Classification
triples: 84336

Taxref2Worms
type: Linkset
link predicate: exactMatch
subjects target: TAXREF-LD
objects target: World Register of Marine Species
triples: 163038

Class of habitats
subclass of: Concept
equivalent class: Habitat
description: Class of types of habitat (subclass of skos:Concept)
deprecated: true

Collection of habitat concepts
type: Collection
member: Marine habitat
member: Freshwater
member: Brackish water
member: Terrestrial

Marine habitat
type: Concept
in scheme: TAXREF-LD
preferred label: Milieu marin @fr
definition: Species living exclusively in marine habitat
definition: Espèces vivant uniquement en milieu marin @fr
related match: ENVO_01000320

Freshwater
type: Concept
in scheme: TAXREF-LD
preferred label: Eau douce @fr
definition: Species living exclusively in freshwater
definition: Espèces vivant uniquement en eau douce @fr

Brackish water
type: Concept
in scheme: TAXREF-LD
preferred label: Eau saumâtre @fr
definition: Species living exclusively in brackish water
definition: Espèces vivant uniquement en eau saumâtre @fr

Terrestrial
type: Concept
in scheme: TAXREF-LD
preferred label: Terrestre @fr
definition: Species living exclusively in terrestrial habitat
definition: Espèces vivant uniquement en milieu terrestre @fr

Collection of biological stages
type: Collection
member: Adult
member: Polyp
member: Medusa
member: Ephyra
member: Juvenile
member: Manca
member: Egg
member: Larva
member: Nauplius
member: Planula
member: Postlarva
member: Spat
member: Subadult
member: Zoea
member: Megalopa
member: Hydroid
member: Cypris
member: Hatchling
member: Copepodite I
member: Copepodite II
member: Copepodite III
member: Copepodite IV
member: Copepodite V
member: Copepodite VI
member: Gametophyte
member: Sporophyte
member: Macrothallus
member: Microthallus
member: 1-year old
member: Fetus

Adult
type: Concept
type: phase of life
in scheme: TAXREF-LD
preferred label: Adulte @fr

Polyp
type: Concept
type: phase of life
in scheme: TAXREF-LD
preferred label: Polype @fr

Medusa
type: Concept
type: phase of life
in scheme: TAXREF-LD
preferred label: Méduse @fr

Ephyra
type: Concept
type: phase of life
in scheme: TAXREF-LD

Juvenile
type: Concept
type: phase of life
in scheme: TAXREF-LD
preferred label: Juvénile @fr

Manca
type: Concept
type: phase of life
in scheme: TAXREF-LD

Egg
type: Concept
type: phase of life
in scheme: TAXREF-LD
preferred label: Œuf @fr

Larva
type: Concept
type: phase of life
in scheme: TAXREF-LD
preferred label: Larve @fr

Nauplius
type: Concept
type: phase of life
in scheme: TAXREF-LD

Planula
type: Concept
type: phase of life
in scheme: TAXREF-LD

Postlarva
type: Concept
type: phase of life
in scheme: TAXREF-LD
preferred label: Post-larve @fr
related match: UBERON_0014406

Spat
type: Concept
type: phase of life
in scheme: TAXREF-LD
preferred label: Au nid @fr

Subadult
type: Concept
type: phase of life
in scheme: TAXREF-LD
preferred label: Subadulte @fr

Zoea
type: Concept
type: phase of life
in scheme: TAXREF-LD

Megalopa
type: Concept
type: phase of life
in scheme: TAXREF-LD

Hydroid
type: Concept
type: phase of life
in scheme: TAXREF-LD
preferred label: Hydroïde @fr

Cypris
type: Concept
type: phase of life
in scheme: TAXREF-LD

Hatchling
type: Concept
type: phase of life
in scheme: TAXREF-LD
preferred label: Nouveau-né @fr

Copepodite I
type: Concept
type: phase of life
in scheme: TAXREF-LD

Copepodite II
type: Concept
type: phase of life
in scheme: TAXREF-LD

Copepodite III
type: Concept
type: phase of life
in scheme: TAXREF-LD

Copepodite IV
type: Concept
type: phase of life
in scheme: TAXREF-LD

Copepodite V
type: Concept
type: phase of life
in scheme: TAXREF-LD

Copepodite VI
type: Concept
type: phase of life
in scheme: TAXREF-LD

Gametophyte
type: Concept
type: phase of life
in scheme: TAXREF-LD

Sporophyte
type: Concept
type: phase of life
in scheme: TAXREF-LD

Macrothallus
type: Concept
type: phase of life
in scheme: TAXREF-LD

Microthallus
type: Concept
type: phase of life
in scheme: TAXREF-LD

1-year old
type: Concept
type: phase of life
in scheme: TAXREF-LD
preferred label: De l'année @fr

Fetus
type: Concept
type: phase of life
in scheme: TAXREF-LD
preferred label: Foetus @fr
related match: UBERON_0000068

male oganisms
label: oganismes mâles @fr
equivalent class: Restriction
  on property: has sex
  has value: Q6581097
equivalent class: BILA_0000027
equivalent class: male organism

female oganisms
label: oganismes femelles @fr
equivalent class: Restriction
  on property: has sex
  has value: Q6581072
equivalent class: BILA_0000028
equivalent class: female organism

Collection of interaction specificities
type: Collection
member: Mandatory
member: Principal
member: Regular
member: Optional
member: Sporadic

Mandatory
type: Concept
in scheme: TAXREF-LD
preferred label: Obligatoire @fr
definition: The interaction is mandatory for the survival of the individual
definition: L'interaction est obligatoire à la survie de l'individu @fr
related match: NCIT C25652

Principal
type: Concept
in scheme: TAXREF-LD
preferred label: Principale @fr
definition: A principal interaction is not mandatory, it can be remplaced by an optional interaction with another species
definition: Une interaction principale n'est pas obligatoire, elle peut être remplacée par une autre interaction occasionelle avec une autre espèce @fr
related match: NCIT C25628

Regular
type: Concept
in scheme: TAXREF-LD
preferred label: Régulière @fr
definition: The interaction is regularly observed
definition: L'interaction est régulièrement observée @fr
related match: NCIT C102843

Optional
type: Concept
in scheme: TAXREF-LD
preferred label: Facultative @fr
definition: An optional interaction is not mandatory for the survival of the individual
definition: Une interaction facultative n'est pas obligatoire à la survie de l'individu @fr
related match: NCIT C25603
related match: Q59864995

Sporadic
type: Concept
in scheme: TAXREF-LD
preferred label: occasionnelle / exceptionnelle @fr
definition: The interaction is observed sporadically
definition: L'interaction est observée de manière occasionnelle/exceptionnelle @fr
related match: NCIT C64954

Maritime area
subclass of: territorial entity (Wikidata)
subclass of: body of water (Wikidata)
description: Maritime area different from seas, oceans, territorial waters and EEZ.
comment: A maritime area, generally surrounding a landmass, that does not correspond to any specific sea or ocean, nor to any internationally recognized administrative subdivision (i.e. territorial waters or EEZ)

administrative territorial entity of France (Wikidata)
type: Class
equivalent class: TerritoireFrancais
equivalent class: UniteAdministrative

municipal arrondissement (Wikidata)
type: Class
equivalent class: ArrondissementMunicipal

commune of France (Wikidata)
type: Class
equivalent class: Commune

department of France (Wikidata)
type: Class
equivalent class: Departement

region of France (Wikidata)
type: Class
equivalent class: Region

overseas collectivity (Wikidata)
type: Class
equivalent class: CollectiviteDOutreMer

sovereign state (Wikidata)
type: Class
equivalent class: Pays

has taxonomic rank
type: AnnotationProperty
description: Relates a scientific name or a taxon to a taxonimical rank
comment: This property is not equivalent to http://rs.tdwg.org/ontology/voc/TaxonConcept#rank nor http://rs.tdwg.org/ontology/voc/TaxonName#rank whose domains are http://rs.tdwg.org/ontology/voc/TaxonConcept#TaxonConcept and http://rs.tdwg.org/ontology/voc/TaxonName#TaxonName respectively, whereas we want to use taxrefprop:hasRank with taxa implemented as owl:Class's as well as scientific names implemented as instances of skos:Concept.
comment: This property is not equivalent to dwc:taxonRank which is expected to be used only with literal values (see http://rs.tdwg.org/dwc/terms/guides/rdf/index.htm, section 3.5)
equivalent property: has rank
equivalent property: taxon rank (Wikidata)

has reference name
type: AnnotationProperty
description: Relates a taxon to its reference (valid) scientific name
comment: DwC's scientificName property is recommended to be used with a literal object, and does not distinguish between reference vs. synonym names. Hence, TAXREF-LD extends it (rdfs:subPropertyOf) instead of asserting an equivalence.

has synonym
type: AnnotationProperty
description: Relates a taxon to one of its synonyms
comment: DwC's scientificName property is recommended to be used with a literal object, and does not distinguish between reference vs. synonym names. Hence, in TAXREF-LD, we extend it with rdfs:subPropertyOf instead of asserting an equivalence.

has vernacular name
type: AnnotationProperty
description: Relates a taxon to one of its vernacular (common) names
equivalent property: taxon common name (Wikidata)

has extended vernacular name
type: AnnotationProperty
description: Relates a taxon to one of its vernacular (common) names in the form of a SKOS extended label
comment: This property was initially defined as a subPropertyOf skosxl:altLabel. However skosxl:altLabel is an owl:ObjectProperty and thus cannot apply to a class. Therefore, we instead define it a an owl:AnnotationProperty whose range is a skosxl:Label
range: Label

has habitat
type: AnnotationProperty
equivalent property: habitat (Wikidata)
description: Relates a taxon to an habitat in which it lives

has status
type: AnnotationProperty
description: Relates a taxon to one of its biogeographical, red list or legal statuses.

has trophic level
type: AnnotationProperty
description: Relates a taxon to its tophic level

has scientific name authority
type: AnnotationProperty
equivalent property: authority
equivalent property: authorship
description: Provides the authorship information of a scientific name
comment: TDWG ontology's property http://rs.tdwg.org/ontology/voc/TaxonName#authorship is preferably associated with a scientific name (http://rs.tdwg.org/ontology/voc/TaxonName#TaxonName), which is in line with TAXREF-LD's modelling. By contrast, DwC's scientificNameAuthorship property is associated with a taxon (dwc:Taxon), and its object shoud be a literal (DwC does not have a class for taxon names). Therefore, TAXREF-LD's hasAuthority property is not equivalent to the latter.

is the reference name of
type: AnnotationProperty
inverse: has reference name
description: Relates a scientific name to the taxon for which it is the reference (valid) name

is a synonym of
type: AnnotationProperty
inverse: has synonym
description: Relates a scientific name to a taxon for which it is a synonym

status value
type: ObjectProperty
description: Relates a taxon status with the actual status value
domain: Biogeographical, conservation or legal status of a taxon

status type
type: ObjectProperty
description: Relates a taxon status with the type of status which is a narrower concept of taxrefstatus:TaxonStatusType
domain: Biogeographical, conservation or legal status of a taxon

has sex
type: ObjectProperty
equivalent property: P21
description: Gives the sex of a biologic individual (member of a taxon class)

has biological stage
type: ObjectProperty
equivalent property: P4774
description: Gives the biological stage of a biologic individual (member of a taxon class)

has a specificity
type: ObjectProperty
description: Specificity of the interaction

has biogeograpical status
type: ObjectProperty
description: (deprecated). Relates a taxon to a biogeograpical status within a certain region. As of TAXREF v12, this property should no longer be used. Instead use class taxrefstatus:BioGeographicalStatus
deprecated: true
range: Class of biogeographical status values

Biogeographical, conservation or legal status of a taxon
type: Class
comment: Relates a biogeographical, conservation or legal status of a taxon with the geographical location where this status is valid and the bibliographic source that assigned this status to that taxon

IUCN Red List status of a taxon in a geographical area, according to a bibliographic source
subclass of: Biogeographical, conservation or legal status of a taxon

Biogeographical status of a taxon in a geographical area, according to a bibliographic source
subclass of: Biogeographical, conservation or legal status of a taxon
comment: The biogeographical status of a taxon with the geographical area where this status applies and the bibliographic source that assigned this status to that taxon

Status of a taxon attested by a legal document
subclass of: Biogeographical, conservation or legal status of a taxon
comment: To be used jointly with http://taxref.mnhn.fr/lod/status/TaxonStatusType whose narrower concepts represent directives, conventions, regulations or protections

Top concept for types of taxon statuses
type: Concept
in scheme: TAXREF-LD

International Convention
type: Concept
broader: Top concept for types of taxon statuses
in scheme: TAXREF-LD
preferred label: Convention internationale @fr

European Directive
type: Concept
broader: Top concept for types of taxon statuses
in scheme: TAXREF-LD
preferred label: Directive européenne @fr

Regulation
type: Concept
broader: Top concept for types of taxon statuses
in scheme: TAXREF-LD
preferred label: Règlementation @fr

Protection
type: Concept
broader: Top concept for types of taxon statuses
in scheme: TAXREF-LD

Probably extinct regionaly
type: conservation status (Wikidata)
label: Probablement disparue au niveau régional @fr
description: Taxon is not extinct worldwide but may be extinct in a specific region

Extinct regionaly and possibly extinct worldwide
type: conservation status (Wikidata)
label: Disparue au niveau régional mais on ne sait pas si elle est éteinte au niveau mondial @fr
description: Taxon is certainly disappeared regionally and possibly extinct worldwide

Not applicable
type: conservation status (Wikidata)
label: Non applicable @fr
description: Taxon was introduced artificially in a region. Red list status does not apply in that case.

Class of biogeographical status values
subclass of: Concept
description: Class of biogeographical status values (subclass of skos:Concept)
deprecated: true

Collection of biogeographical status values
type: Collection
member: present
member: occasional
member: endemic
member: subendemic
member: cryptogenic
member: Introduced
member: introduced invasive
member: introduced casual
member: doubtful
member: absent
member: disappeared
member: extinct
member: introduced extinct/disappeared
member: endemic extinct
member: reported in error

present
type: Concept
in scheme: TAXREF-LD
label: présent (indigène ou indéterminé) @fr
definition: Taxon présent dans la zone géographique considérée, i.e. taxon indigène ou taxon dont on ne sait pas s’il appartient à l'une des autres catégories. Le défaut de connaissance profite donc à l’indigénat. Par indigène on entend : taxon qui est issu de la zone géographique considérée et qui s’y est naturellement développé sans contribution humaine, ou taxon qui est arrivé là sans intervention humaine (intentionnelle ou non) à partir d’une zone dans laquelle il est indigène 6 . (NB : exclus les hybrides dont l’un des parents au moins est introduit dans la zone considérée). Sont regroupés sous ce statut tous les taxons catégorisés natif ou autochtone. Les taxons hivernant quelques mois de l’année entrent dans cette catégorie. @fr
related match: DoubtfullyNative
related match: OccurrenceStatus present
related match: Native

occasional
type: Concept
in scheme: TAXREF-LD
label: occasionnel @fr
definition: Taxon occasionnel, non nicheur, accidentel dans la zone géographique considérée (par exemple migrateur de passage). @fr

endemic
type: Concept
in scheme: TAXREF-LD
label: endémique @fr
definition: Taxon naturellement restreint à la zone géographique considérée. @fr

subendemic
type: Concept
in scheme: TAXREF-LD
label: subendémique @fr
definition: Taxon naturellement restreint à une zone un peu plus grande que la zone géographique considérée mais dont les principales populations se situent dans la zone géographique considérée. Pour l’Outre-mer, on applique ce statut à l’endémisme régional : pour la Guyane française = endémique du plateau des Guyanes ; pour les Antilles françaises = endémique des petites Antilles ; pour Mayotte = endémique des Comores ; pour la Réunion = endémique des Mascareignes ; pour les TAAF = endémique de la South Indian Ocean Province. @fr
related match: Endemic

cryptogenic
type: Concept
in scheme: TAXREF-LD
label: cryptogène @fr
definition: Taxon dont l’aire d’origine est inconnue et dont on ne peut donc pas dire s’il est indigène ou introduit @fr
related match: DoubtfullyNative
related match: DoubtfullyIntroduced

Introduced
type: Concept
in scheme: TAXREF-LD
label: Introduit @fr
definition: Taxon introduit (établi ou possiblement établi) dans la zone géographique considérée. Par introduit on entend : taxon dont la présence dans la zone géographique considérée est due à une intervention humaine, intentionnelle ou non, ou taxon qui est arrivé dans la zone sans intervention humaine mais à partir d’une zone dans laquelle il est introduit. Par établi (terme pour la faune, = naturalisé pour la flore) on entend : taxon introduit qui forme des populations viables (se reproduisant) et durables qui se maintiennent dans le milieu naturel sans besoin d’intervention humaine. Sont regroupés sous ce statut tous les taxons catégorisés non-indigène, exotique, exogène, allogène, allochtone, non-natif, naturalisé (en anglais : alien) dans une publication scientifique. @fr
related match: Introduced

introduced invasive
type: Concept
in scheme: TAXREF-LD
label: introduit envahissant @fr
definition: Taxon introduit dans la zone géographique considérée, qui produit des descendants fertiles souvent en grand nombre, et qui a le potentiel pour s’étendre de façon exponentielle sur une grande aire, augmentant ainsi rapidement son aire de répartition 6 . Cela induit souvent des conséquences écologiques, économiques ou sanitaires négatives (IUCN, 2000). Sont regroupés sous ce statut tous les taxons catégorisés introduite envahissante, exotique envahissant ou invasif (invasive en anglais) dans une publication scientifique. @fr
related match: Introduced
related match: Naturalized

introduced casual
type: Concept
in scheme: TAXREF-LD
label: introduit non établi (dont domestique) @fr
definition: Taxon introduit qui peut occasionnellement se reproduire en dehors de son aire de culture ou de captivité, mais qui ne peut se maintenir à l’état sauvage car ne pouvant former de populations viables sans intervention humaine, et qui dépend donc d’introductions répétées pour se maintenir dans la nature. Sont regroupés sous ce statut tous les taxons catégorisés introduit occasionnel, subspontané, échappé de culture ou de captivité (en anglais : casual alien)). Ce statut inclut les taxons strictement domestiques (faune) ou uniquement cultivés (flore). @fr
related match: Introduced
related match: Cultivated
related match: CasualAlien

doubtful
type: Concept
in scheme: TAXREF-LD
label: douteux @fr
definition: Taxon dont la présence dans la zone géographique considérée n’est pas avérée (en attente de confirmation). @fr

absent
type: Concept
in scheme: TAXREF-LD
definition: Taxon non présent dans la zone géographique considérée. @fr

disappeared
type: Concept
in scheme: TAXREF-LD
label: disparu @fr
definition: Taxon qui n’est plus présent à l’état sauvage dans la zone géographique considérée mais qui n’est pas globalement éteint. Rq : en cas de doute sur la présence ancienne ou non du taxon à l’état sauvage, utiliser le statut absent (A). @fr
related match: Extinct

extinct
type: Concept
in scheme: TAXREF-LD
label: éteint @fr
definition: Taxon globalement éteint (= ayant totalement disparu de la surface du globe terrestre). @fr

introduced extinct/disappeared
type: Concept
in scheme: TAXREF-LD
label: introduit éteint/disparu @fr
definition: Taxon introduit par le passé mais aujourd’hui disparu de la zone géographique considérée (W) ou éteint (X). @fr
related match: Introduced
related match: Extinct

endemic extinct
type: Concept
in scheme: TAXREF-LD
label: endémique éteint @fr
definition: Taxon endémique et aujourd’hui disparu, donc globalement éteint (X). @fr
related match: Endemic
related match: Extinct

reported in error
type: Concept
in scheme: TAXREF-LD
label: mentionné par erreur @fr
definition: Taxon mentionné par erreur comme présent sur le territoire considéré. @fr

Class of taxonomical ranks
subclass of: Concept
equivalent class: TaxonRankTerm
description: Class of taxonomical ranks, subclass of skos:Concept
deprecated: true

Collection of taxonomical ranks
type: Collection
member: Domain

Domain
type: Concept
in scheme: TAXREF-LD

Super-kingdom
type: Concept
in scheme: TAXREF-LD

Kingdom
type: Concept
in scheme: TAXREF-LD

Sub-kingdom
type: Concept
in scheme: TAXREF-LD

Infra-kingdom
type: Concept
in scheme: TAXREF-LD

Phylum
type: Concept
in scheme: TAXREF-LD

Sub-phylum
type: Concept
in scheme: TAXREF-LD

Infra-phylum
type: Concept
in scheme: TAXREF-LD

Division
type: Concept
in scheme: TAXREF-LD

Sub-division
type: Concept
in scheme: TAXREF-LD

Super-class
type: Concept
in scheme: TAXREF-LD

Cladus
type: Concept
in scheme: TAXREF-LD

Class
type: Concept
in scheme: TAXREF-LD

Sub-class
type: Concept
in scheme: TAXREF-LD

Infra-class
type: Concept
in scheme: TAXREF-LD

Legio
type: Concept
in scheme: TAXREF-LD

Super-order
type: Concept
in scheme: TAXREF-LD

Cohort
type: Concept
in scheme: TAXREF-LD

Order
type: Concept
in scheme: TAXREF-LD

Sub-order
type: Concept
in scheme: TAXREF-LD

Infra-order
type: Concept
in scheme: TAXREF-LD

Super-family
type: Concept
in scheme: TAXREF-LD

Family
type: Concept
in scheme: TAXREF-LD

Sub-family
type: Concept
in scheme: TAXREF-LD

Tribe
type: Concept
in scheme: TAXREF-LD

Sub-tribe
type: Concept
in scheme: TAXREF-LD

Genus
type: Concept
in scheme: TAXREF-LD

Sub-genus
type: Concept
in scheme: TAXREF-LD

Section
type: Concept
in scheme: TAXREF-LD

Sub-section
type: Concept
in scheme: TAXREF-LD

Series
type: Concept
in scheme: TAXREF-LD

Sub-series
type: Concept
in scheme: TAXREF-LD

Agregate
type: Concept
in scheme: TAXREF-LD

Species
type: Concept
in scheme: TAXREF-LD

Semi-species
type: Concept
in scheme: TAXREF-LD

Micro-species
type: Concept
in scheme: TAXREF-LD

Sub-species
type: Concept
in scheme: TAXREF-LD

Natio
type: Concept
in scheme: TAXREF-LD

Varietas
type: Concept
in scheme: TAXREF-LD

Sub-varietas
type: Concept
in scheme: TAXREF-LD

Forma
type: Concept
in scheme: TAXREF-LD

Sub-forma
type: Concept
in scheme: TAXREF-LD

Forma species
type: Concept
in scheme: TAXREF-LD

Linea
type: Concept
in scheme: TAXREF-LD

Clone
type: Concept
in scheme: TAXREF-LD

Race
type: Concept
in scheme: TAXREF-LD

Cultivar
type: Concept
in scheme: TAXREF-LD

Morpha
type: Concept
in scheme: TAXREF-LD

Abberatio
type: Concept
in scheme: TAXREF-LD

Collection of trophic levels
type: Collection
member: Unknown
member: Autotroph
member: Chemoautotroph
member: Photoautotroph
member: Heterotroph
member: Herbivore
member: Graminivore
member: Folivore
member: Rhizovore
member: Algivore
member: Frugivore
member: Granivore
member: Xylophage
member: Florivore
member: Palynivore
member: Nectarivore
member: Decomposer
member: Saprotroph
member: Saproxylotroph
member: Coprophage
member: Detritivore
member: Carnivore
member: Predator
member: Scavenger
member: Fungivore
member: Xylofungivore

Unknown
type: Concept
in scheme: TAXREF-LD
preferred label: Inconnu @fr
definition: We don't know the species trophic level
definition: On ne connait pas le niveau trophique de l'espèce @fr

Autotroph
type: Concept
in scheme: TAXREF-LD
preferred label: Producteur primaire @fr
definition: An organism which is capable of incorporating abiogenic (inorganic) carbon into its biomass
definition: Organisme capable d'incorporer du carbone abiogène (inorganique) dans sa biomasse @fr
related match: Q131427

Chemoautotroph
type: Concept
in scheme: TAXREF-LD
preferred label: Chemoautotrophe @fr
definition: An autotroph which is capable of obtaining energy from the bonds in a chemical compound
definition: Autotrophe capable d'obtenir de l'énergie à partir des liaisons d'un composé chimique @fr
related match: Q747472

Photoautotroph
type: Concept
in scheme: TAXREF-LD
preferred label: Photoautotrophe @fr
definition: An autotroph which is capable of transforming light into chemical energy
definition: Un autotrophe capable de transformer la lumière en énergie chimique @fr
related match: Q335183

Heterotroph
type: Concept
in scheme: TAXREF-LD
preferred label: Hétérotrophe @fr
definition: An organism that obtains carbon for growth and development by metabolizing biogenic organic compounds derived from living or dead material
definition: Organisme qui obtient du carbone pour sa croissance et son développement en métabolisant des composés organiques biogènes dérivés de matières vivantes ou mortes @fr
related match: Q159344

Herbivore
type: Concept
in scheme: TAXREF-LD
preferred label: Consommateur d’autotrophes @fr
definition: A heterotroph which consumes plants or macroalgae via ingestion through a type of 'mouth'. Plant or algal matter is broken down through an internal digestion process
definition: Un hétérotrophe qui consomme des plantes ou des macroalgues par ingestion par une sorte de 'bouche'. La matière végétale ou algale est décomposée par un processus de digestion interne @fr
related match: Q59099

Graminivore
type: Concept
in scheme: TAXREF-LD
definition: An herbivore that primarily consumes grasses
definition: Un herbivore qui consomme principalement des graminées @fr

Folivore
type: Concept
in scheme: TAXREF-LD
definition: An herbivore that primarily consumes leaves
definition: Un herbivore qui consomme principalement des feuilles @fr

Rhizovore
type: Concept
in scheme: TAXREF-LD
definition: An herbivore that primarily consumes roots
definition: Un herbivore qui consomme principalement des racines @fr

Algivore
type: Concept
in scheme: TAXREF-LD
definition: An herbivore that primarily consumes algae
definition: Un herbivore qui consomme principalement des algues @fr

Frugivore
type: Concept
in scheme: TAXREF-LD
definition: An herbivore that primarily consumes fruits or fruit-like vegetables
definition: Un herbivore qui consomme principalement des fruits ou des légumes ressemblant à des fruits @fr

Granivore
type: Concept
in scheme: TAXREF-LD
definition: An herbivore that primarily consumes seeds
definition: Un herbivore qui consomme principalement des graines @fr

Xylophage
type: Concept
in scheme: TAXREF-LD
definition: An herbivore that primarily consumes wood
definition: Un herbivore qui consomme principalement d'aubier' @fr

Florivore
type: Concept
in scheme: TAXREF-LD
definition: An herbivore that primarily consumes flowers
definition: Un herbivore qui consomme principalement des fleurs @fr

Palynivore
type: Concept
in scheme: TAXREF-LD
definition: An herbivore that primarily consumes pollen
definition: Un herbivore qui consomme principalement du pollen @fr
related match: Q3805698

Nectarivore
type: Concept
in scheme: TAXREF-LD
definition: An herbivore that primarily consumes nectar
definition: Un herbivore qui consomme principalement du nectar de plantes @fr

Decomposer
type: Concept
in scheme: TAXREF-LD
preferred label: Décomposeur @fr
definition: Organism that breaks down dead or decaying organisms
definition: Organisme qui décompose les organismes morts ou en décomposition @fr

Saprotroph
type: Concept
in scheme: TAXREF-LD
preferred label: Saprophage @fr
definition: A decomposer that obtains nutrition through extracellular digestion of decaying organic matter
definition: Un décomposeur qui obtient la nutrition par digestion extracellulaire de la matière organique en décomposition @fr

Saproxylotroph
type: Concept
in scheme: TAXREF-LD
preferred label: Saproxylophage @fr
related match: Q770791

Coprophage
type: Concept
in scheme: TAXREF-LD
definition: A decomposer which obtains nutrition by consuming feces
definition: Un décomposeur qui se nourrit en consommant des matières fécales @fr

Detritivore
type: Concept
in scheme: TAXREF-LD
definition: A decomposer which obtains nutrition by consuming detritus
definition: Un décomposeur qui se nourrit en consommant des détritus @fr

Carnivore
type: Concept
in scheme: TAXREF-LD
preferred label: Consommateur d’hétérotrophes @fr
definition: A heterotroph that consumes animals in whole or in part via ingestion through a type of 'mouth'. Animal matter is broken down through an internal digestion process.
definition: Un hétérotrophe qui consomme des animaux en tout ou en partie par ingestion par une sorte de 'bouche'. La matière animale est décomposée par un processus de digestion interne. @fr
related match: Q220314

Predator
type: Concept
in scheme: TAXREF-LD
preferred label: Prédateur @fr
definition: A carnivore that actively captures and consumes other animals, causing their immediate or imminent death
definition: Un carnivore qui capture et consomme activement d'autres animaux, causant leur mort immédiate ou imminente @fr
related match: Q29017578

Scavenger
type: Concept
in scheme: TAXREF-LD
preferred label: Nécrophage / Charognard @fr
definition: A carnivore that feeds on dead and decaying animal matter
definition: Un carnivore qui se nourrit de matières animales mortes et en décomposition @fr

Fungivore
type: Concept
in scheme: TAXREF-LD
preferred label: Mycétophage @fr
definition: A heterotroph which consumes fungi
definition: Un hétérotrophe qui consomme des champignons @fr

Xylofungivore
type: Concept
in scheme: TAXREF-LD
preferred label: Xylomycétophage @fr

valid in place (Wikidata)

stated in (Wikidata)

name (Wikidata)

ISO 3166-1 alpha-3 code (Wikidata)

ISO 3166-2 code (Wikidata)

location (Wikidata)

Zoobank publication id (Wikidata)

DOI (Wikidata)

IUCN Red List (Wikidata)

IUCN European Red List (Wikidata)

IUCN French Red List (Wikidata)

IUCN French Regional Red List (Wikidata)

least concern (Wikidata)

near threatened (Wikidata)

vulnerable (Wikidata)

endangered species (Wikidata)

critically endangered (Wikidata)

extinct in the Wild (Wikidata)

extinct (Wikidata)

data deficient (Wikidata)

archipelago (Wikidata)

island (Wikidata)

AlgaeBase ID (Wikidata)

Amphibian Species of the World ID (Wikidata)

Avibase ID (Wikidata)

BirdLife ID (Wikidata)

Tela Botanica ID

Cockroach Species File Online ID (Wikidata)

Coreoidea Species File Online ID (Wikidata)

DORIS ID (Wikidata)

EPPO Global Database ID (Wikidata)

Fauna Europaea ID (Wikidata)

FishBase ID (Wikidata)

GBIF ID (Wikidata)

Global Invasive Species Database ID (Wikidata)

IPNI ID (Wikidata)

IUCN taxon ID

Index Fungorum ID (Wikidata)

Index Hepaticarum ID (Wikidata)

Mammal Species of the World ID (Wikidata)

Mantodea Species File Online ID (Wikidata)

Mycobank ID (Wikidata)

Orthoptera Species File Online ID (Wikidata)

POWO ID (Wikidata)

Phasmida Species File Online ID (Wikidata)

Psyl'list ID (Wikidata)

SANDRE ID (Wikidata)

SeaLifeBase ID (Wikidata)

Systematic Catalog of Culicidae ID (Wikidata)

TAXREF ID (Wikidata)

TROPICOS ID (Wikidata)

The Global Lepidoptera Names Index ID (Wikidata)

The Plant List (TPL) ID (Wikidata)

The World Spider Catalog ID (Wikidata)

VASCAN ID (Wikidata)

WoRMS ID (Wikidata)

World Checklist of Selected Plant Families ID (Wikidata)

ZooBank ID (Wikidata)

International Committee on Taxonomy of Viruses ID (Wikidata)

World Flora Online ID